Welcome to the
Protein Model Portal (PMP)
PMP gives access to various models computed by comparative modeling methods provided by different partner sites, and provides access to various interactive services for model building, and quality assessment.
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Access all of PMP
Interactive Modeling  | Need a model?
Submit your sequence to registered modeling servers and receive results by email |
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Quality Estimation  |
Are you aware of possible errors in a model?
Estimate the model accuracy by submitting to registered quality estimation servers |
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Modeling highlights
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 | Computational Design of
Proteins Targeting the Conserved Stem Region of Influenza
Hemagglutinin
Fleishman, et.al. Science. (2011) 332:816-821. |
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 | Macromolecular docking restrained
by a small angle X-ray scattering profile Schneidman-Duhovny, et.al. J Struct Biol. (2011) 173:461-471 |
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Improved molecular replacement by density- and energy-guided protein structure optimization.
DiMaio, et.al. Nature. (2011) 473(7348):540-3 |
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Community-wide GPCR Dock 2010 Assessment: Status of GPCR Modeling and Docking
I. Kufareva et al. Structure (2011), 19, 1108-1126 |
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 | MultiFit: a web server for fitting multiple protein structures into their EM density map.
E. Tjioe, K. Lasker et al. Nucleic Acids Res. (2011) 39, W167-W170 |
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 | Crystal structure of a monomeric retroviral protease solved by protein folding game players
F.Khatib, F. DiMaio et al. Nature Struc. & Mol. Bio (2011) 18, 1175-1177 |
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 | Assessment of template based protein
structure predictions in CASP9
Mariani, V. et.al. Proteins (2011) 79(Suppl 10):37–58 |
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Tutorials and Guides
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Release notes:
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Portal version: 2012/03/08 (revision:5943)
Data Release: 2012/03/22 (statistics)
The current release is based on UniProt release 2012_03 and consists of 22.8 million comparative protein models
for 3.7 million distinct UniProt sequences.
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PMP is developed by the
Computational Structural Biology Group at the
Swiss Institute of Bioinformatics (SIB) and the
Biozentrum of the University of Basel.
Reference: Arnold, K., Kiefer, F., Kopp, J., Battey, J. N., Podvinec, M., Westbrook, J. D., Berman, H. M., Bordoli, L. and Schwede, T. (2009). The Protein Model Portal. J Struct Funct Genomics, 10, 1-8.
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