PMP | Related Tools
Modeling Services:
- ModWeb
- Server for Comparative Protein Structure Modeling
- M4T
- MJ4T protein modeling server
- ProtMod - protein modeling server (JCMM)
- PUDGE
- Protein structure prediction server
- RosettaAntibody
- homology modeling server for predicting antibody Fv region structures
- SWISS-MODEL
- SWISS-MODEL Workspace for protein structure homology modeling
- SCWRL
- SCWRL Server (JCSG)
Template Selection / Fold Assignment / Function Prediction:
- FFAS03
- Fold & Function Assignment System (JCMM)
- PSCA - Protein Sequence Comparative Analysis (JCSG)
- Predict Protein
- sequence analysis, structure and function prediction (NESG)
- LOMETS
- local meta-threading-server for protein structure prediction
- PUDGE
- Protein structure prediction server
- SWISS-MODEL - SWISS-MODEL Workspace template selection tools
Structure / Model Quality Evaluation:
- ANOLEA - Atomic Non-Local Environment Assessment
- ConQuass - ConQuass webserver
- DFIRE2 - Protein Conformation Free Energy Score
- MetaMQAP - Meta Model Quality Assessment server
- ModFOLD - ModFOLD Model Quality Assessment Server
- ProQ - ProQ Protein Quality Predictors
- ProSA - ProSA-web Protein Structure Analysis
- PSQS - Protein Structure Quality Score (JCMM)
- PSVS - Protein Structure Validation Software suite (NESG)
- QMEAN - QMEAN Server for Model Quality Estimation (SIB)
- SelectPro - protein model selection using a structure-based energy function resistant to blunders
- TSVMod, DOPE, GA341 - Model Evaluation Server (SaliLab)
- SWISS-MODEL - SWISS-MODEL Workspace protein structure assessment tools (SIB)
- Verify3D - Structure evluation server