Workshop on Applications of Protein Models in Biomedical Research
University of California, San Francisco
July 11&12, 2008
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Partcipant Roster
Maria Avila
University of California
Bioengineering
324 Stanley Hall
Berkeley, CA 94720-1762
Phone: +1 (510) 642 5833
maricugh@gmail.com
Helen M. Berman
Director, RCSB Protein Data Bank
Rutgers, The State University of New Jersey
Department of Chemistry and Chemical Biology
610 Taylor Road
Piscataway, NJ 08854-8087
Phone: +1 (732) 445-4667
Fax: +1 (732) 445-4320
berman@rcsb.rutgers.edu
Lorenza Bordoli
Swiss Institute of Bioinformatics
Biozentrum University of Basel
Klingelbergstr 50-70
CH-4056 Basel, Switzerland
lorenza.bordoli@unibas.ch
Steven Brenner
Department of Plant & Microbial Biology
461A Koshland Hall #3102
University of California
Berkeley, CA 94720-3102
Tel: (510) 643-9131
Fax: (510) 666-2505
brenner@compbio.berkeley.edu
Stephen K. Burley
SGX Pharmaceuticals
10505 Roselle Street
San Diego, CA 92121
Tel: 858-558-4850 x1263
Fax: 858-558-3402
stephen_burley@sgxpharma.com
Emidio Capriotti
CIPF
Bioinformatics
Av. Autopista del Saler 16
46013 Valencia, España
Yu Chen
University of California
Pharmaceutical Chemistry
1700 4th Street
San Francisco, CA 94158-2550
Francesco Colizzi
University of California
Pharmaceutical Chemistry
1700 4th Street
San Francisco, CA 94143-2280
fcolizzi@blur.compbio.ucsf.edu
Rashmit Das
Indian Istitute of Technology Kharagpur
Mathematics and Computing
B-334, LLR Hall of Residence
IIT Kharagpur
Kharagpur 721302
India
Rhiju Das
University of Washington
Department of Biochemistry
J Wing, Health Sciences Building
Box 357350
Seattle, WA 98195
Phone: (206) 543-7134
Fax: (206) 685-1792
Ruchira Datta
University of California
324 Stanley Hall
Berkeley, CA 94720
Phone: (510) 813-9888
Fax: (510) 642-5835
Eric di Luccio
University of California
Computer Science
Genome Center
451 East Health Sciences Drive
Davis, CA 95616
Phone: (530) 400 4750
Nikolay Dokholyan
Departement of Biochemistry and Biophysics
University of North Carolina at Chapel Hill
303 Mary Ellen Jones, CB # 7260
Chapel Hill, NC 27599
Phone: (919) 843 2513
Fax: (919 966-2852
dokh@med.unc.edu
Roland L. Dunbrack, Jr.
Fox Chase Cancer Center
Institute for Cancer Research
333 Cottman Avenue
Philadelphia, PA 19111
Phone: (215) 728-2434
Fax: (215) 728-2412
roland.dunbrack@fccc.edu
Rafaela Ferreira
UCSF
Dep. of Pharmaceutical Chemistry
1700 4th St. BH509
San Francisco 94158
Krzysztof Fidelis
Protein Structure Prediction Center
UC Davis
451 Health Sciences Drive
Davis 95616
Andras Fiser
Albert Einstein College of Medicine
Systems and Computational Biology
1300 Morris Park Ave
Bronx, NY 10461
David Gae
University of California
Graduate Group Complex
310 Life Sciences
One Shields Avenue
Davis, CA 95616
Phone: (530) 752-4863
Adam Godzik
Bioinformatics and Systems Biology Program
Burnham Institute for Medical Research
10901 North Torrey Pines Road
La Jolla, CA 92037
Phone: (858) 646-3168
Fax: (858) 795-5249
adam@burnham.org
Jerome Hert
University of California San Francisco
Department of Pharmaceutical Chemistry
Byers Hall Room 501 MC 2550
1700 4th Street
San Francisco 94158-2330
Barry Honig
Columbia University
Department of Biochemistry, HHMI,
C2B2
1130 St. Nicholas Ave
New York, NY 10032
Phone: (212) 851-4651
bh6@columbia.edu
Janet Huang
Rutgers University
Center for Advanced Biotechnology and Medicine
679 Hoes Lane
Piscataway, NJ 08820
Christine Humblet
Computational Chemistry/Cheminformatics
Chemical & Screening Sciences
Wyeth Research
865 Ridge Road
Monmouth Junction, NJ 08852
Phone: (732) 274-4045
humblec@wyeth.com
John Irwin
University of California San Francisco
Department of Pharmaceutical Chemistry
1700 4th St Box 2550
San Francisco 94158-2330
Andrei Istomin
Burnham Institute for Medical Research
Bioinformatics & Systems Biology
10901 North Torrey Pines Road
La Jolla, CA 92037
ayistomin@gmail.com
Matt Jacobson
UCSF MC 2240
Genentech Hall Room N472C
600
16th Street
San Francisco, CA 94158-2517
matt.jacobson@ucsf.edu
Suma Jaini
Indian Institute of Technology Kharagpur
Biotechnology
H-110, S.N. Hall of Residence
IIT Kharagpur
Kolkata, 721302
India
sumatbio.kgp@gmail.com
Andrzej Joachimiak
The University of Chicago
Director, Structural Biology Center
Argonne National Laboratory
9700 S Class Avenue 202/Q118
Argonne, IL 60439
Tel: 630-252-6126
Fax: 630-252-0564
andrzejj@anl.gov
David Jones
University College London
Department of Computer Science
Gower Street
London WC1E GBT
United Kingdom
Florian Kiefer
Swiss Institute of Bioinformatics
Biozentrum University of Basel
Klingelbergstr 50-70
CH-4056 Basel, Switzerland
florian.kieferi@stud.unibas.ch
Bryan Kolaczkowski
University of Oregon
Center for Ecology and Evolutionary Biology
588 Maxwell road
Eugene, OR 97404
bkolaczk@uoregon.edu
Peter Kolb
UCSF
Pharm Chem
1700 4th Street Box 2550
'San Francisco 94158
Tanja Kortemme
Biopharmaceutical Sciences
UCSF QB3
1700 4th Street, Byers Hall
San Francisco, CA 94143-2540
kortemme@cgl.ucsf.edu
Andriy Kryshtafovych
Protein Structure Prediction Center
UC Davis
451 Health Sciences Drive
Davis 95616
Stanley Krystek
BMS
345 Park Avenue
New York, New York, 10154-0037
Phone: (212) 546-4000
Christian Laggner
UCSF
Pharmaceutical Chemistry
Mission Bay Campus QB3
1700 4th Street, Box 2550
San Francisco 94158-2330
Michael Levitt
Stanford University School of Medicine
Department of Structural Biology
Room D-109
Fairchild Building
Stanford, CA 94305
michael.levitt@stanford.edu
Torsten Luksch
University of Dundee
Drug Discovery Unit
Dow Street
Dundee DD1 2PL, Scottland
t.luksch@dundee.ac.uk
Binchen Mao
Rutgers University
Molecular Bioscience
11 Deborah Dr.
Piscataway, NJ 08854
Adam Marko
University of California
Biopharmaceutical Sciences
Byers Hall
1700 4th Street
San Francisco, CA 94158
Gaetano Montelione
Rutgers University
Center for Advanced Biotechnology and Medicine
679 Hoes Lane
Piscataway, NJ 08820
John Moult
CARB
Center for Advance Research in Biotechnology
University of Maryland
9600 Gudelsky Dr.
Rockville, MD 20850
Phone: +1 (240) 314-6241
moult@umbi.umd.edu
Diana Murray
Columbia University
Center for Computational Biology and Bioinformatics
622 West 168th Street
New York, NY 10032
Phone: +1 212 342 5753
John Norvell
Program Director,
Structural Genomics and Proteomics Technology Branch
National Institute of General Medicine
Science Room 2AS113B
45 Center Drive MSC
6200 Bethesda, MD 20892-6200
norvellj@nigms.nih.gov
Yanay Ofran
Bar Ilan University
LS Ramat Gan 52900, Israel
Ursula Pieper
University of California
Biopharmaceutical Sciences
Byers Hall
1700 4th Street
San Francisco, CA 94158
Andrej Sali
Department of Biopharmaceutical Sciences / Department of Pharmaceutical Chemistry
California Institute for Quantitative Biosciences
University of California, San Francisco
UCSF MC 2552, Byers Hall Room 503B
1700 4th Street
San Francisco, CA 94158-2330
Phone: (415) 514-4227
Fax: (415) 514-4231
sali@salilab.org
Roberto Sanchez
Mount Sinai School of Medicine
Structural and Chemical Biology
1425 Madison Avenue
New York, NY 10029
Phone:
roberto.sanchez@mssm.edu
Sriram Sankararaman
324 Stanley Hall
UC- Berkeley
Berkeley, CA
Phone: (510) 813-9888
sriram_s@cs.berkeley.edu
Avner Schlessinger
University of California
Biopharmaceutical Sciences
1700 4th Street, Byers Hall 503
San Francisco, CA 94158-2330
Phone: +1 917 855 4711
Torsten Schwede
Swiss Institute of Bioinformatics
Biozentrum University of Basel
Klingelbergstrasse 50/70
CH-4056 Basel / Switzerland
Phone: +41 61 267 15 86
torsten.schwede@unibas.ch
Brian Shoichet
University of California
Mission Bay Campus, QB3
Dept. of Pharmaceutical Chemistry
1700 4th Street, Box 2550
San Francisco, CA 94158-2330
Phone:
(415) 514-4253
Fax:
(415) 514-4260
shoichet@cgl.ucsf.edu
Kimmen Sjolander
University of California
324 Stanley Hall
Berkeley, CA 94720
Phone: (510) 642-9932
Fax: (510) 642-5835
Ward Smith
Program Director Cell Biology and Biophysics Division
National Institute of General Medical Sciences
Building 45, Room 2As-19F, MSC 6200
45 Center Drive
Bethesda, MD, 20892
smithwar@nigms.nih.gov
Tobin Sosnick
University of Chicago
Biochemistry and Molecular Biology
929 e. 57th St.
GCIS W107E
Chicago, IL60637
Daron M. Standley
Protein Data Bank Japan (PDBj)
Institute for Protein Research (IPR)
Osaka University
3-2 Yamadaoka, Suita
Osaka, Japan 565-0871
Phone: +81-(0)6-6879-4311
Fax: +81-(0)6-6879-8636
standley@protein.osaka-u.ac.jp
Terry R. Stouch
6211 Kaitln Court
West Windsor, NJ 08550
Phone & Fax: (609)275-7234
Denise Teotico
UCSF
Dept. of Pharmaceutical Chemistry
1700 4th St. Box 2250'
San Francisco 94158
Sandor Vajda
Biomedical Engineering Structural BioInformatics Laboratory
Boston University
44 Cummington Street
Boston, MA 02215 USA
Phone: 617-353-4757
vajda@bu.edu
John Westbrook
Rutgers, The State University of New Jersey
Department of Chemistry and Chemical Biology
610 Taylor Road
Piscataway, NJ 08854-8087
Phone: (732) 445-0103
Fax: (732) 445-4320
jwest@rcsb.rutgers.edu
Ian Wilson
The Scripps Research Institute
Joint Center for Structural Genomics
10550 N. Torrey Pines Road
La Jolla, CA 92937
Phone: +1 858 784-9706
Jack Yang
Harvard Medical School
P.O. Box 400888
Cambridge, 02140-088
Phone: +1 301 230 5638
Golan Yona
Stanford University
Deaprtment of Structural Biology
Clark Center S210
Stanford 94305
Qing Zhang
Burnham Institute for Medical Research
10901 North Torrey Pines Road
La Jolla, CA 92037